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PubMed MCP Server

PubMed MCP Server

The PubMed MCP Server provides a bridge between AI assistants and PubMed's vast repository of biomedical literature through the Model Context Protocol (MCP). It allows AI models to search for scientific articles, access their metadata, and perform deep analysis in a programmatic way.

Tools

1. search_pubmed_key_words

Search articles on PubMed using keywords.

2. search_pubmed_advanced

Perform an advanced article search on PubMed with multiple parameters.

3. get_pubmed_article_metadata

Retrieve metadata of a PubMed article using its PMID.

4. download_pubmed_pdf

Attempt to download the full-text PDF of a PubMed article.

5. deep_paper_analysis

Perform a comprehensive analysis of a PubMed article.

JSON Config

{
  "mcpServers": {
    "pubmed": {
      "command": "python",
      "args": ["-m", "pubmed-mcp-server"]
    }
  }
}

Useful Links

GitHubDeepWiki

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